Bacteria

This is a example data for a bacterium. The data is artificial and should only demonstrate what the data in this schema look like.

{
  "bioSafety": [
    {
      "classification": "German classification",
      "riskgroup": "1",
      "source": [
        "/sources/0"
      ],
      "url": "https://www.baua.de/EN/Service/Legislative-texts-and-technical-rules/Rules/TRBA/TRBA-466.html"
    },
    {
      "classification": "Japan classification",
      "riskgroup": "1",
      "source": [
        "/sources/0"
      ],
      "url": null
    }
  ],
  "cellShape": [
    {
      "cellShape": "coccus",
      "source": [
        "/sources/0"
      ]
    }
  ],
  "cellSize": [
    {
      "cellLength": {
        "maximal": 2.2,
        "minimal": 1.3,
        "unit": "\u00b5m"
      },
      "cellWidth": {
        "maximal": 0.8,
        "minimal": 0.5,
        "unit": "\u00b5m"
      },
      "source": [
        "/sources/0"
      ]
    }
  ],
  "collections": [
    {
      "address": null,
      "available": true,
      "axenicCulture": true,
      "catalogUrl": null,
      "depositedAs": null,
      "depositionDate": null,
      "depositor": null,
      "email": null,
      "history": "<- KCTC <- J.-W. Bae, KRIBB",
      "identifier": [
        {
          "name": "ROR",
          "propertyID": "https://www.wikidata.org/wiki/Property:P6782",
          "url": null,
          "value": "https://ror.org/02tyer376"
        }
      ],
      "legalName": "Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH",
      "name": "DSMZ",
      "resourceNumber": "DSMZ 20543",
      "restrictionsOnUse": null,
      "source": [
        "/sources/0"
      ],
      "supplyForms": [
        "Lyo",
        "Agar",
        "DNA"
      ],
      "url": "https://www.dsmz.de/"
    },
    {
      "address": null,
      "available": true,
      "axenicCulture": true,
      "catalogUrl": null,
      "depositedAs": null,
      "depositionDate": null,
      "depositor": null,
      "email": null,
      "history": "<- AH Eggerth",
      "identifier": [
        {
          "name": "ROR",
          "propertyID": "https://www.wikidata.org/wiki/Property:P6782",
          "url": null,
          "value": "https://ror.org/03thhhv76"
        }
      ],
      "legalName": "American Type Culture Collection",
      "name": "ATCC",
      "resourceNumber": "ATCC 8486",
      "restrictionsOnUse": null,
      "source": [
        "/sources/0"
      ],
      "supplyForms": [
        "Lyo"
      ],
      "url": "https://www.atcc.org/"
    },
    {
      "address": null,
      "available": true,
      "axenicCulture": true,
      "catalogUrl": null,
      "depositedAs": null,
      "depositionDate": null,
      "depositor": null,
      "email": null,
      "history": "<-- STAFF 1027 <-- ATCC 8486 <-- A. H. Eggerth",
      "identifier": [
        {
          "name": "ROR",
          "propertyID": "https://www.wikidata.org/wiki/Property:P6782",
          "url": null,
          "value": "https://ror.org/00s05em53"
        }
      ],
      "legalName": "RIKEN BioResource Research Center",
      "name": "JCM",
      "resourceNumber": "JCM 9978",
      "restrictionsOnUse": null,
      "source": [
        "/sources/0"
      ],
      "supplyForms": [
        "Lyo",
        "Agar"
      ],
      "url": "https://jcm.brc.riken.jp/en/"
    },
    {
      "address": null,
      "available": true,
      "axenicCulture": true,
      "catalogUrl": null,
      "depositedAs": null,
      "depositionDate": null,
      "depositor": null,
      "email": null,
      "history": "<-- T. Mitsuoka <-- ATCC 8486 <-- A. H. Eggerth",
      "identifier": [
        {
          "name": "ROR",
          "propertyID": "https://www.wikidata.org/wiki/Property:P6782",
          "url": null,
          "value": "https://ror.org/00s05em53"
        }
      ],
      "legalName": "RIKEN BioResource Research Center",
      "name": "JCM",
      "resourceNumber": "JCM 6421",
      "restrictionsOnUse": null,
      "source": [
        "/sources/0"
      ],
      "supplyForms": [
        "Lyo",
        "Agar"
      ],
      "url": "https://jcm.brc.riken.jp/en/"
    },
    {
      "address": null,
      "available": true,
      "axenicCulture": true,
      "catalogUrl": null,
      "depositedAs": null,
      "depositionDate": null,
      "depositor": null,
      "email": null,
      "history": "<- JH Kim <- ATCC <- AH Eggerth, `Bacteroides limosus`",
      "identifier": [
        {
          "name": "ROR",
          "propertyID": "https://www.wikidata.org/wiki/Property:P6782",
          "url": null,
          "value": "https://ror.org/03ep23f07"
        }
      ],
      "legalName": "Korea Research Institute of Bioscience and Biotechnology",
      "name": "Korean Collection for Type Cultures",
      "resourceNumber": "KCTC 3266",
      "restrictionsOnUse": null,
      "source": [
        "/sources/0"
      ],
      "supplyForms": [
        "Lyo",
        "Agar"
      ],
      "url": "http://www.kribb.re.kr/eng/"
    },
    {
      "address": null,
      "available": true,
      "axenicCulture": true,
      "catalogUrl": null,
      "depositedAs": null,
      "depositionDate": null,
      "depositor": null,
      "email": null,
      "history": "<- DSM <- ATCC <- A.H.Eggerth",
      "identifier": [
        {
          "name": "ROR",
          "propertyID": "https://www.wikidata.org/wiki/Property:P6782",
          "url": null,
          "value": "https://ror.org/01tm6cn81"
        }
      ],
      "legalName": "University Of Gothenburg",
      "name": "Culture Collection University Of Gothenburg",
      "resourceNumber": "CCUG 16793",
      "restrictionsOnUse": null,
      "source": [
        "/sources/0"
      ],
      "supplyForms": [],
      "url": "https://www.ccug.se/"
    },
    {
      "address": null,
      "available": true,
      "axenicCulture": true,
      "catalogUrl": null,
      "depositedAs": null,
      "depositionDate": null,
      "depositor": null,
      "email": null,
      "history": "1994, ATCC <- A.H. Eggerth, Bacteroides limosus",
      "identifier": [
        {
          "name": "ROR",
          "propertyID": "https://www.wikidata.org/wiki/Property:P6782",
          "url": null,
          "value": "https://ror.org/0495fxg12"
        }
      ],
      "legalName": "Biological Resource Center of Institut Pasteur (CRBIP)",
      "name": "Collection of Institut Pasteur",
      "resourceNumber": "CIP 104169",
      "restrictionsOnUse": null,
      "source": [
        "/sources/0"
      ],
      "supplyForms": [],
      "url": "https://catalogue-crbip.pasteur.fr/"
    }
  ],
  "colony": [],
  "connectedPersons": [
    {
      "identifier": [
        {
          "name": "ORCiD",
          "propertyID": "https://www.wikidata.org/wiki/Property:P496",
          "url": null,
          "value": "https://orcid.org/0000-0001-6433-5270"
        }
      ],
      "name": "J.-W. Bae",
      "role": "isolator",
      "source": [
        "/sources/0"
      ]
    }
  ],
  "cultivationMedia": [
    {
      "name": "PYG MEDIUM (MODIFIED) (DSMZ Medium 104)",
      "reagentUsed": [
        "Yeast extract",
        "Peptone",
        "Glucose",
        "Trypticase peptone",
        "Beef extract",
        "L-Cysteine HCl x H2O",
        "NaHCO3",
        "NaCl",
        "KH2PO4",
        "K2HPO4",
        "MgSO4 x 7 H2O",
        "CaCl2 x 2 H2O",
        "Hemin",
        "Ethanol",
        "Resazurin",
        "Tween 80",
        "Vitamin K1",
        "NaOH",
        "Distilled water"
      ],
      "relatedData": [
        "/relatedData/0"
      ],
      "source": [
        "/sources/0"
      ],
      "url": "https://mediadive.dsmz.de/medium/104?bacdive=5432"
    },
    {
      "name": "CIP Medium 187",
      "reagentUsed": [],
      "source": [
        "/sources/0"
      ],
      "url": "https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=187"
    }
  ],
  "enzymes": [
    {
      "active": true,
      "alternateName": [
        "acid phosphatase",
        "tartrate-resistant acid phosphatase",
        "prostatic acid phosphatase",
        "tracp",
        "acpase",
        "uteroferrin",
        "tracp 5b",
        "phosphatidic acid phosphatase",
        "tracp5b"
      ],
      "hasECNumber": "3.1.3.2",
      "name": "acid phosphatase",
      "relatedData": [
        "/relatedData/0"
      ],
      "source": [
        "/sources/0"
      ],
      "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.1.3.2"
    },
    {
      "active": true,
      "alternateName": [
        "ap",
        "alkaline phosphatase",
        "bone alkaline phosphatase",
        "placental alkaline phosphatase",
        "alpase",
        "apase",
        "intestinal alkaline phosphatase",
        "tnsalp",
        "phosphomonoesterase",
        "secreted alkaline phosphatase"
      ],
      "hasECNumber": "3.1.3.1",
      "name": "alkaline phosphatase",
      "source": [
        "/sources/0"
      ],
      "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.1.3.1"
    },
    {
      "active": false,
      "alternateName": [
        "chymotrypsin",
        "alpha-chymotrypsin",
        "bovine alpha-chymotrypsin",
        "chymotrypsin a",
        "alpha-ct",
        "chymotrypsin b",
        "chtp",
        "alpha chymotrypsin",
        "alpha-chymotrypsin a",
        "chymotrypsin ii"
      ],
      "hasECNumber": "3.4.21.1",
      "name": "alpha-chymotrypsin",
      "source": [
        "/sources/0"
      ],
      "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.4.21.1"
    },
    {
      "active": false,
      "alternateName": [
        "alpha-l-fucosidase",
        "acid hydrolase",
        "fuca1",
        "serum alpha-l-fucosidase",
        "serum afu",
        "alpha-fuc",
        "fuca2",
        "alf1_wf",
        "alpha-l-fucosidase i",
        "alphafuc"
      ],
      "hasECNumber": "3.2.1.51",
      "name": "alpha-fucosidase",
      "source": [
        "/sources/0"
      ],
      "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.2.1.51"
    },
    {
      "active": false,
      "alternateName": [
        "arginine deiminase",
        "arginine dihydrolase",
        "ppadi",
        "arginine-degrading enzyme",
        "l-arginine deiminase",
        "arca-1",
        "lymphocyte blastogenesis inhibitory factor",
        "paadi",
        "streptococcal acid glycoprotein"
      ],
      "hasECNumber": "3.5.3.6",
      "name": "arginine dihydrolase",
      "source": [
        "/sources/0"
      ],
      "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.5.3.6"
    },
    {
      "active": true,
      "alternateName": [
        "beta-galactosidase",
        "beta-gal",
        "beta-d-galactosidase",
        "senescence-associated beta-galactosidase",
        "endo-beta-galactosidase",
        "bglap",
        "sa-beta-gal",
        "acid beta-galactosidase",
        "beta galactosidase",
        "betagal"
      ],
      "hasECNumber": "3.2.1.23",
      "name": "beta-galactosidase",
      "source": [
        "/sources/0"
      ],
      "url": "https://www.brenda-enzymes.org/enzyme.php?ecno=3.2.1.23"
    }
  ],
  "fattyAcidProfiles": [
    {
      "library": "BHIBLA",
      "profile": [
        {
          "alternateName": [],
          "ecl": "14.621",
          "identifier": [],
          "name": "C15:0 ISO",
          "percent": 31.9
        },
        {
          "alternateName": [],
          "ecl": "16",
          "identifier": [],
          "name": "C16:0",
          "percent": 14.0
        },
        {
          "alternateName": [],
          "ecl": "16.481",
          "identifier": [],
          "name": "C17:1 ISO I/C16:0 DMA",
          "percent": 9.7
        },
        {
          "alternateName": [],
          "ecl": "14.711",
          "identifier": [],
          "name": "C15:0 ANTEISO",
          "percent": 6.7
        },
        {
          "alternateName": [],
          "ecl": "17.724",
          "identifier": [],
          "name": "C18:2 \u03c96,9c/C18:0 ANTE",
          "percent": 5.4
        },
        {
          "alternateName": [],
          "ecl": "15.117",
          "identifier": [],
          "name": "C14:0 ISO 3OH",
          "percent": 5.3
        },
        {
          "alternateName": [],
          "ecl": "14",
          "identifier": [],
          "name": "C14:0",
          "percent": 4.2
        },
        {
          "alternateName": [],
          "ecl": "14.966",
          "identifier": [],
          "name": "unknown 14.966",
          "percent": 3.9
        },
        {
          "alternateName": [],
          "ecl": "18.177",
          "identifier": [],
          "name": "unknown 18.177",
          "percent": 3.3
        }
      ],
      "software": "Sherlock 6.1",
      "source": [
        "/sources/0"
      ]
    }
  ],
  "gcContent": [
    {
      "method": "thermal denaturion, midpoint method (Tm)",
      "source": [
        "/sources/0"
      ],
      "value": 47.8
    }
  ],
  "halophily": [
    {
      "alternateName": [
        "Table salt",
        "sodium chloride",
        "ClNa"
      ],
      "identifier": [
        {
          "name": "PubChem",
          "propertyID": "https://wikidata.org/wiki/Property:P662",
          "url": "https://pubchem.ncbi.nlm.nih.gov/compound/5234",
          "value": "5234"
        },
        {
          "name": "ChEBI",
          "propertyID": "https://wikidata.org/wiki/Property:P683",
          "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:26710",
          "value": "CHEBI:26710"
        }
      ],
      "maximal": null,
      "minimal": null,
      "name": "Sodium Chloride",
      "optimal": 0.0,
      "source": [
        "/sources/0"
      ],
      "tests": [
        {
          "growth": true,
          "maximal": 1.0,
          "minimal": 0.0,
          "relatedData": [
            "/relatedData/0"
          ],
          "unit": "g/g%"
        }
      ],
      "unit": "g/g%"
    }
  ],
  "hemolysis": [
    {
      "blood": "sheep",
      "hemolysisType": "alpha",
      "source": [
        "/sources/0"
      ]
    },
    {
      "blood": "horse",
      "hemolysisType": "beta",
      "source": [
        "/sources/0"
      ]
    }
  ],
  "identifier": [
    {
      "name": "CCNO",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "DSM 20543"
    },
    {
      "name": "CCNO",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "ATCC 8486"
    },
    {
      "name": "CCNO",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "NCIB 9763"
    },
    {
      "name": "CCNO",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "CCUG 16793"
    },
    {
      "name": "CCNO",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "JCM 6421"
    },
    {
      "name": "CCNO",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "BCRC 14401"
    },
    {
      "name": "CCNO",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "CIP 104169"
    },
    {
      "name": "CCNO",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "JCM 9978"
    },
    {
      "name": "CCNO",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "KCTC 3266"
    },
    {
      "name": "CCNO",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "NCIMB 9763"
    },
    {
      "name": "Designation",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": null,
      "value": "STAFF 1027"
    },
    {
      "name": "BacDiveID",
      "propertyID": "https://www.wikidata.org/wiki/Property:P2946",
      "source": [
        "/sources/0"
      ],
      "url": "https://bacdive.dsmz.de/strain/5432",
      "value": "5432"
    },
    {
      "name": "SI-ID",
      "propertyID": null,
      "source": [
        "/sources/0"
      ],
      "url": "https://straininfo.dsmz.de/strain/34969",
      "value": "34969"
    }
  ],
  "isolation": [
    {
      "date": null,
      "isolatedAt": {
        "address": null,
        "email": null,
        "identifier": [
          {
            "name": "ROR",
            "propertyID": "https://www.wikidata.org/wiki/Property:P6782",
            "url": null,
            "value": "https://ror.org/03ep23f07"
          }
        ],
        "legalName": null,
        "name": "Korea Research Institute of Bioscience and Biotechnology",
        "url": null
      },
      "source": [
        "/sources/0"
      ]
    }
  ],
  "knownApplications": [
    {
      "application": "Production of substance x",
      "source": [
        "/sources/0"
      ]
    },
    {
      "application": "Degradation of substance y",
      "source": [
        "/sources/0"
      ]
    }
  ],
  "legal": [
    {
      "dualUse": false,
      "gmo": false,
      "gmoInformation": null,
      "gras": false,
      "nagoyaRestrictions": "No known restrictions under the Nagoya protocol",
      "qps": false,
      "quarantineEU": null,
      "source": [
        "/sources/0"
      ]
    }
  ],
  "literature": [
    {
      "author": [],
      "datePublished": null,
      "name": "Something",
      "publisher": [],
      "source": [
        "/sources/0"
      ],
      "url": "https://doi.org/10.1128/JB.30.3.277-299.1935"
    },
    {
      "author": [],
      "datePublished": null,
      "name": "Something different",
      "publisher": [],
      "source": [
        "/sources/0"
      ],
      "url": "https://doi.org/10.1128/AEM.62.4.1242-1247.1996"
    },
    {
      "author": [],
      "datePublished": null,
      "name": "Something completely different",
      "publisher": [],
      "source": [
        "/sources/0"
      ],
      "url": "https://doi.org/10.1099/00207713-44-4-787"
    }
  ],
  "metabolites": [
    {
      "alternateName": [
        "L-alanine",
        "Alinine",
        "2-Aminopropanoic acid",
        "2-aminopropanoic acid",
        "Alanine"
      ],
      "identifier": [
        {
          "name": "ChEBI",
          "propertyID": "https://wikidata.org/wiki/Property:P683",
          "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:16449",
          "value": "CHEBI:16449"
        },
        {
          "name": "PubChem",
          "propertyID": "https://wikidata.org/wiki/Property:P662",
          "url": "https://pubchem.ncbi.nlm.nih.gov/compound/5950",
          "value": "5950"
        }
      ],
      "name": "alanine",
      "source": [
        "/sources/0"
      ],
      "tests": [
        {
          "active": true,
          "kindOfUtilization": null,
          "protocol": null,
          "relatedData": [
            "/relatedData/0"
          ],
          "type": "utilization"
        }
      ]
    },
    {
      "alternateName": [
        "L-asparagine",
        "asparagine"
      ],
      "identifier": [
        {
          "name": "ChEBI",
          "propertyID": "https://wikidata.org/wiki/Property:P683",
          "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:22653",
          "value": "CHEBI:22653"
        },
        {
          "name": "PubChem",
          "propertyID": "https://wikidata.org/wiki/Property:P662",
          "url": "https://pubchem.ncbi.nlm.nih.gov/compound/6267",
          "value": "6267"
        }
      ],
      "name": "asparagine",
      "source": [
        "/sources/0"
      ],
      "tests": [
        {
          "active": true,
          "kindOfUtilization": null,
          "protocol": null,
          "type": "production"
        },
        {
          "active": true,
          "kindOfUtilization": null,
          "protocol": null,
          "type": "utilization"
        }
      ]
    },
    {
      "alternateName": [
        "aspartate(1-)",
        "hydrogen aspartate",
        "2-ammoniosuccinate",
        "2-ammoniobutanedioate",
        "aspartic acid monoanion",
        "CHEBI:35391",
        "FT-0653860",
        "FT-0657391"
      ],
      "identifier": [
        {
          "name": "ChEBI",
          "propertyID": "https://wikidata.org/wiki/Property:P683",
          "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:35391",
          "value": "CHEBI:35391"
        },
        {
          "name": "PubChem",
          "propertyID": "https://wikidata.org/wiki/Property:P662",
          "url": "https://pubchem.ncbi.nlm.nih.gov/compound/5460542",
          "value": "5460542"
        }
      ],
      "name": "aspartate",
      "source": [
        "/sources/0"
      ],
      "tests": [
        {
          "active": true,
          "kindOfUtilization": null,
          "protocol": null,
          "type": "utilization"
        }
      ]
    },
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