Fungi#
This is a example data for a yeast. The data is artificial and should only demonstrate what the data in this schema look like.
Attention, this example data is outdated
{
"applications": [
{
"application": "US Patent 3,726,763",
"source": "/sources/0"
},
{
"application": "production of citric acid",
"source": "/sources/0"
}
],
"bio_safety": [
{
"classification": "German classification",
"group": "2",
"source": "/sources/0",
"url": "https://www.baua.de/EN/Service/Legislative-texts-and-technical-rules/Rules/TRBA/TRBA-466.html"
}
],
"cell_length": [
{
"max": 7.0,
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"source": "/sources/0",
"unit": "\u00b5m"
}
],
"cell_motility": [
{
"flag_arr": null,
"flagellum": null,
"gliding": null,
"motile": false,
"source": "/sources/0"
}
],
"cell_shape": [
{
"cell_shape": "round",
"source": "/sources/0"
}
],
"cell_wall": [
{
"alternate_name": [
"D-Glc",
"D-Glucopyranose",
"D-Glucopyranoside",
"D-Glucose",
"Glc",
"Glucopyranose",
"Glucopyranoside",
"Glucose",
"dextrose",
"2280-44-6",
"Grape sugar"
],
"identifier": [
{
"name": "PubChem",
"property": "https://wikidata.org/wiki/Property:P662",
"url": "https://pubchem.ncbi.nlm.nih.gov/compound/5793",
"value": "5793"
},
{
"name": "ChEBI",
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"url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:4167",
"value": "CHEBI:4167"
}
],
"name": "glucose",
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"source": "/sources/0"
},
{
"alternate_name": [
"D-Man",
"D-Mannopyranose",
"D-Mannopyranoside",
"D-Mannose",
"Man",
"Mannopyranose",
"Mannopyranoside",
"Mannose",
"Carubinose",
"Seminose"
],
"identifier": [
{
"name": "PubChem",
"property": "https://wikidata.org/wiki/Property:P662",
"url": "https://pubchem.ncbi.nlm.nih.gov/compound/18950",
"value": "18950"
},
{
"name": "ChEBI",
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"value": "CHEBI:4208"
}
],
"name": "mannose",
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}
],
"cell_width": [
{
"max": 3.0,
"min": 1.0,
"source": "/sources/0",
"unit": "\u00b5m"
}
],
"collections": [
{
"address": null,
"available": true,
"axenic": true,
"catalog_link": null,
"date": null,
"depositor": null,
"email": null,
"history": null,
"identifier": [
{
"name": "ROR",
"property": "https://www.wikidata.org/wiki/Property:P6782",
"url": null,
"value": "https://ror.org/030a5r161"
}
],
"legal_name": "Westerdijk Fungal Biodiversity Institute",
"name": "CBS",
"resource_num": "CBS 562",
"restrictions": null,
"source": "/sources/0",
"supply_forms": [
"Lyo",
"Agar"
],
"url": "https://wi.knaw.nl/"
},
{
"address": null,
"available": true,
"axenic": true,
"catalog_link": null,
"date": null,
"depositor": null,
"email": null,
"history": "ATCC <-- CBS <-- JE Mackinnon 572",
"identifier": [
{
"name": "ROR",
"property": "https://www.wikidata.org/wiki/Property:P6782",
"url": null,
"value": "https://ror.org/03thhhv76"
}
],
"legal_name": "American Type Culture Collection",
"name": "ATCC",
"resource_num": "ATCC 18804",
"restrictions": null,
"source": "/sources/0",
"supply_forms": [
"Lyo"
],
"url": "http://www.atcc.org/"
},
{
"address": null,
"available": true,
"axenic": true,
"catalog_link": null,
"date": null,
"depositor": null,
"email": null,
"history": "CECT, 1987 < NCYC, 1960 < CBS < Mackinnon, J.E. No. 572",
"identifier": [
{
"name": "ROR",
"property": "https://www.wikidata.org/wiki/Property:P6782",
"url": null,
"value": "https://ror.org/043nxc105"
}
],
"legal_name": "Universitat de Val\u00e8ncia",
"name": "CECT",
"resource_num": "CECT 1002",
"restrictions": null,
"source": "/sources/0",
"supply_forms": [
"Lyo",
"Agar",
"DNA"
],
"url": "https://www.uv.es/"
}
],
"colony": [],
"connected_persons": [],
"cultivation_media": [
{
"name": "GPYA",
"reagents": [
"glucose",
"peptone",
"yeast extract",
"agar",
"distilled water"
],
"source": "/sources/0",
"url": null
}
],
"enzymes": [],
"fatty_acid_profiles": [],
"gc": [
{
"method": null,
"source": "/sources/0",
"value": 33.5
}
],
"halophily": [
{
"alternate_name": [
"Table salt",
"sodium chloride",
"ClNa"
],
"identifier": [
{
"name": "PubChem",
"property": "https://wikidata.org/wiki/Property:P662",
"url": "https://pubchem.ncbi.nlm.nih.gov/compound/5234",
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},
{
"name": "ChEBI",
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"url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:26710",
"value": "CHEBI:26710"
}
],
"maximal": null,
"minimal": null,
"name": "Sodium Chloride",
"optimal": null,
"source": "/sources/0",
"tests": [
{
"growth": true,
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"minimal": 10.0,
"unit": "v/v%"
},
{
"growth": false,
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"minimal": 16.0,
"unit": "v/v%"
}
],
"unit": "unknown"
}
],
"hemolysis": [],
"identifier": [
{
"name": "CCNO",
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"source": "/sources/0",
"url": null,
"value": "ATCC 18804"
},
{
"name": "CCNO",
"property": null,
"source": "/sources/0",
"url": null,
"value": "CBS 562"
},
{
"name": "CCNO",
"property": null,
"source": "/sources/0",
"url": null,
"value": "CCRC 20512"
},
{
"name": "CCNO",
"property": null,
"source": "/sources/0",
"url": null,
"value": "CECT 1002"
},
{
"name": "CCNO",
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"source": "/sources/0",
"url": null,
"value": "DBVPG 6133"
},
{
"name": "CCNO",
"property": null,
"source": "/sources/0",
"url": null,
"value": "IFO 1385"
},
{
"name": "CCNO",
"property": null,
"source": "/sources/0",
"url": null,
"value": "IGC 3436"
},
{
"name": "CCNO",
"property": null,
"source": "/sources/0",
"url": null,
"value": "JCM 1542"
},
{
"name": "CCNO",
"property": null,
"source": "/sources/0",
"url": null,
"value": "KCTC 7270"
},
{
"name": "CCNO",
"property": null,
"source": "/sources/0",
"url": null,
"value": "NCYC 597"
},
{
"name": "CCNO",
"property": null,
"source": "/sources/0",
"url": null,
"value": "NRRL Y-12983"
},
{
"name": "CCNO",
"property": null,
"source": "/sources/0",
"url": null,
"value": "PYCC 3436"
},
{
"name": "Designation",
"property": null,
"source": "/sources/0",
"url": null,
"value": "DBVPG 6133"
},
{
"name": "TheYeastsStrain",
"property": null,
"source": "/sources/0",
"url": "https://theyeasts.org/page/yeasts-strains-display/309",
"value": "309"
},
{
"name": "SI-ID",
"property": null,
"source": "/sources/0",
"url": "https://straininfo.dsmz.de/strain/14077",
"value": "14077"
}
],
"isolation": [
{
"date": null,
"isolator": null,
"source": "/sources/0"
}
],
"legal": [
{
"GRAS": false,
"QPS": false,
"dual_use": false,
"gmo": false,
"gmo_information": null,
"nagoya": "No known restrictions under the Nagoya protocol",
"quarantine": null,
"source": "/sources/0"
}
],
"literature": [
{
"author": [],
"date": null,
"name": null,
"publisher": [],
"source": "/sources/0",
"url": "https://doi.org/10.1099/00207713-51-4-1593"
},
{
"author": [],
"date": null,
"name": null,
"publisher": [],
"source": "/sources/0",
"url": "https://doi.org/10.1128/JCM.42.12.5624-5635.2004"
},
{
"author": [],
"date": null,
"name": null,
"publisher": [],
"source": "/sources/0",
"url": "https://doi.org/10.1128/jcm.35.5.1216-1223.1997"
},
{
"author": [],
"date": null,
"name": null,
"publisher": [],
"source": "/sources/0",
"url": "https://doi.org/10.1099/13500872-141-7-1523"
},
{
"author": [],
"date": null,
"name": null,
"publisher": [],
"source": "/sources/0",
"url": "https://doi.org/10.1007/BF02049775"
},
{
"author": [],
"date": null,
"name": null,
"publisher": [],
"source": "/sources/0",
"url": "https://doi.org/10.1016/S0723-2020(99)80030-7"
},
{
"author": [],
"date": null,
"name": null,
"publisher": [],
"source": "/sources/0",
"url": "https://doi.org/10.1128/JCM.37.6.1985-1993.1999"
}
],
"metabolites": [
{
"alternate_name": [
"D-Glc",
"D-Glucopyranose",
"D-Glucopyranoside",
"D-Glucose",
"Glc",
"Glucopyranose",
"Glucopyranoside",
"Glucose"
],
"identifier": [
{
"name": "ChEBI",
"property": "https://wikidata.org/wiki/Property:P683",
"url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:4167",
"value": " CHEBI:4167"
},
{
"name": "PubChem",
"property": "https://wikidata.org/wiki/Property:P662",
"url": "https://pubchem.ncbi.nlm.nih.gov/compound/5793",
"value": "5793"
}
],
"name": "D-Glucose",
"source": "/sources/0",
"tests": [
{
"active": true,
"protocol": "F1",
"type": "utilization",
"utilization": null
},
{
"active": true,
"protocol": "C1",
"type": "utilization",
"utilization": null
}
]
},
{
"alternate_name": [
"sucrose",
"57-50-1",
"saccharose",
"sugar",
"Table sugar",
"Cane sugar",
"White sugar",
"D-Sucrose"
],
"identifier": [
{
"name": "ChEBI",
"property": "https://wikidata.org/wiki/Property:P683",
"url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:17992",
"value": " CHEBI:17992"
},
{
"name": "PubChem",
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"url": "https://pubchem.ncbi.nlm.nih.gov/compound/5988",
"value": "5988"
}
],
"name": "Sucrose",
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"tests": [
{
"active": false,
"protocol": "F5",
"type": "utilization",
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},
{
"active": true,
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"type": "utilization",
"utilization": null
}
]
},
{
"alternate_name": [
"L-Sor",
"L-Sorbopyranose",
"L-Sorbopyranoside",
"L-Sorbose",
"L-Xylo-Hex-2-ulo-Pyranose",
"L-Xylo-Hexopyran-2-ulose",
"Sor",
"Sorbopyranose",
"Sorbopyranoside",
"Sorbose"
],
"identifier": [
{
"name": "ChEBI",
"property": "https://wikidata.org/wiki/Property:P683",
"url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:48649",
"value": " CHEBI:48649"
},
{
"name": "PubChem",
"property": "https://wikidata.org/wiki/Property:P662",
"url": "https://pubchem.ncbi.nlm.nih.gov/compound/439192",
"value": "439192"
}
],
"name": "L-Sorbose",
"source": "/sources/0",
"tests": [
{
"active": true,
"protocol": "C3",
"type": "utilization",
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}
]
}
],
"morph_type": "yeast",
"multi_cell": [
{
"multi_cell": false,
"source": "/sources/0"
}
],
"organism_type": "Fungi",
"other_media": [
{
"additional_type": null,
"description": "C albicans visualised using scanning electron microscopy. Scanning electrom microscopy was performed at CenSE, IISc, Bangalore",
"name": "SEM of C. albicans",
"source": "/sources/0",
"url": "https://upload.wikimedia.org/wikipedia/commons/a/a8/SEM_of_C_albicans.tif",
"usage": "Vader1941 at English Wikipedia, CC BY-SA 4.0"
}
],
"oxygen": [
{
"relation": "aerobe",
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}
],
"pathogenicity": [
{
"classification": null,
"host": "human",
"pathogen": "obligate",
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}
],
"ph": [
{
"maximal": null,
"minimal": null,
"optimal": null,
"source": "/sources/0",
"tests": [],
"unit": "pH"
}
],
"sample": [
{
"country": null,
"date": "/1987-06-11",
"description": "Skin of man with interdigital mycosis",
"location": {
"description": "",
"geo": {
"elevation": null,
"latitude": -34.883611,
"longitude": -56.181944,
"precision": null
},
"name": "Montevideo"
},
"source": "/sources/0",
"tags": []
}
],
"sequences": [
{
"accession": "AY497682",
"description": "Candida albicans strain CBS 562 26S ribosomal RNA gene, partial sequence",
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"level": "identifier sequence",
"source": "/sources/0",
"type": "nucleotide",
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]
},
{
"accession": "JN882343",
"description": "Candida albicans strain NRRL Y-12983 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence",
"length": "498",
"level": "identifier sequence",
"source": "/sources/0",
"type": "nucleotide",
"url": [
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]
},
{
"accession": "JN882349",
"description": "Candida albicans strain NRRL Y-12983 28S ribosomal RNA gene, partial sequence",
"length": "546",
"level": "identifier sequence",
"source": "/sources/0",
"type": "nucleotide",
"url": [
"https://www.ncbi.nlm.nih.gov/nuccore/JN882349"
]
},
{
"accession": "CAU45776",
"description": "Candida albicans 26S ribosomal RNA gene, partial sequence",
"length": "546",
"level": "identifier sequence",
"source": "/sources/0",
"type": "nucleotide",
"url": [
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]
},
{
"accession": "GCA_015344825",
"description": "Genome assembly ASM1534482",
"length": "",
"level": "genome",
"source": "/sources/0",
"type": "nucleotide",
"url": [
"https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_015344825"
]
}
],
"sources": [
{
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"email": null,
"identifier": [
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"name": "ROR",
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"value": "https://ror.org/030a5r161"
}
],
"legal_name": "Westerdijk Fungal Biodiversity Institute",
"name": "CBS",
"resource_id": null,
"url": "https://wi.knaw.nl/page/fungal_display/309"
}
],
"spore": [
{
"building": null,
"ejection": null,
"source": "/sources/0",
"type": "spore"
}
],
"stainings": [
{
"name": "Diazonium Blue B reaction",
"source": "/sources/0",
"value": "negative"
}
],
"temperature": [
{
"maximal": null,
"minimal": null,
"optimal": 25.0,
"source": "/sources/0",
"tests": [],
"unit": "C"
}
],
"tolerances": [
{
"alternate_name": [
"5-FC",
"5FC",
"5-Fluorocystosine",
"5-Fluorocytosine",
"Ancobon (TN)",
"Ancobon"
],
"identifier": [
{
"name": "ChEBI",
"property": "https://wikidata.org/wiki/Property:P683",
"url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:5100",
"value": "CHEBI:5100"
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{
"name": "PubChem",
"property": "https://wikidata.org/wiki/Property:P662",
"url": "https://pubchem.ncbi.nlm.nih.gov/compound/3366",
"value": "3366"
}
],
"mic": "0.124",
"name": "flucytosine",
"reaction": "senisitive",
"source": "/sources/0",
"tests": [],
"unit": null
},
{
"alternate_name": [
"Amphotericine B",
"AMPH-B",
"Liposomal Amphotericin B",
"SCHEMBL1648719",
"CHEMBL4785395"
],
"identifier": [
{
"name": "ChEBI",
"property": "https://wikidata.org/wiki/Property:P683",
"url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:2682",
"value": "CHEBI:2682"
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{
"name": "PubChem",
"property": "https://wikidata.org/wiki/Property:P662",
"url": "https://pubchem.ncbi.nlm.nih.gov/compound/14956",
"value": "14956"
}
],
"mic": "0.03",
"name": "amphotericin B",
"reaction": "senisitive",
"source": "/sources/0",
"tests": [],
"unit": null
},
{
"alternate_name": [
"Caspofungin"
],
"identifier": [
{
"name": "ChEBI",
"property": "https://wikidata.org/wiki/Property:P683",
"url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:474180",
"value": "CHEBI:474180"
}
],
"mic": "8",
"name": "caspofungin",
"reaction": "resistant",
"source": "/sources/0",
"tests": [],
"unit": null
}
],
"unified_taxon": {
"alternate_name": [],
"identifier": [
{
"name": "NCBI:txid",
"property": "https://www.wikidata.org/wiki/Property:P685",
"url": "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=5476",
"value": "5476"
},
{
"name": "MycoBank",
"property": "https://www.wikidata.org/wiki/Property:P962",
"url": "https://www.mycobank.org/page/Name%20details%20page/106232",
"value": "256187"
}
],
"name": "Candida albicans",
"parent": {
"alternate_name": [
"Oidium albicans, C.P. Robin (1853)",
"Myceloblastanon albicans, (C.P. Robin, 1928)"
],
"identifier": [
{
"name": "NCBI:txid",
"property": "https://www.wikidata.org/wiki/Property:P685",
"url": "https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=5475",
"value": "5475"
},
{
"name": "MycoBank",
"property": "https://www.wikidata.org/wiki/Property:P962",
"url": "https://www.mycobank.org/page/Name%20details%20page/56219",
"value": "7487"
}
],
"name": "Candida",
"parent": null,
"rank": "genus",
"same_as": [],
"scientific": {
"author": "Berkhout 1923",
"name": "Candida"
},
"status": "validly published"
},
"rank": "species",
"same_as": [
"https://www.ncbi.nlm.nih.gov/datasets/taxonomy/5475/",
"https://en.wikipedia.org/wiki/Candida_albicans"
],
"scientific": {
"author": "(Robin) Berkhout 1923",
"name": "Candida albicans"
},
"status": "validly published"
},
"unified_type_strain": true
}