06. origin
06. origin#
Origin
Description:
Sample and isolation data
array[object]
06.1. origin.sampleDate#
Date
Description:
Date of sampling, using date range format of dublin core: 'YYYY-MM-DD/YYYY-MM-DD' ether side can be empty defining an open ended range, only the year is mandatory, e.g. '/1978' means before 1978
string, null
06.2. origin.country#
Country
Description:
Country where the sample material originated from
object, null
06.2.1. origin.country.name#
Country name Required
Description:
Country code, see ISO 3166-1 alpha-2
string, string, string
06.2.2. origin.country.identifier#
Identifier
Description:
Identifier of every Kind, compare to schema.org PropertyValue class
array[object]
06.2.2.1. origin.country.identifier.name#
Name Required
Description:
Name of the identifier
string
06.2.2.2. origin.country.identifier.value#
Value Required
Description:
Value of the identifier (can also be a URL)
string
06.2.2.3. origin.country.identifier.propertyID#
Property ID
Description:
See schema.org/propertyID
string, null
06.2.2.4. origin.country.identifier.url#
URL
Description:
Uniform Resource Locator of a resource on the Internet
string, null
06.2.2.5. origin.country.identifier.logo#
Logo
Description:
Logo of the Identifier Organization (e.g. DOI, ORCID, ROR, ...)
string, null
06.2.3. origin.country.conventionOfBiologicalDiversityParty#
Is Convention Of Biological Diversity Party
boolean, null
06.2.4. origin.country.cartagenaProtocolParty#
Is Cartagena Protocol Party
boolean, null
06.2.5. origin.country.nagoyaProtocolParty#
Is Nagoya Protocol Party
boolean, null
06.2.6. origin.country.nagoyaKualaLumpurParty#
Is Nagoya Kuala Lumpur Party
boolean, null
06.3. origin.description#
Description
Description:
Description of the sample
string, null
06.4. origin.locationCreated#
Location Created
Description:
Location where the sample was taken
object, null
06.4.1. origin.locationCreated.name#
Name
Description:
Name of the location, e.g. 'Lake Como'
string, null
06.4.2. origin.locationCreated.description#
Description
Description:
Description of the location
string, null
06.4.3. origin.locationCreated.geo#
Geo
Description:
Precise location coordinates
object, null
06.4.3.1. origin.locationCreated.geo.latitude#
Latitude Required
Description:
Should be a float value between -90 and 90
number, string
06.4.3.2. origin.locationCreated.geo.longitude#
Longitude Required
Description:
Should be a float value between -180 and 180
number, string
06.4.3.3. origin.locationCreated.geo.elevation#
Elevation
number, null
06.4.3.4. origin.locationCreated.geo.precision#
Precision
number, null
06.5. origin.tags#
Isolation Source Tags
Description:
Isolation tag system, original used by BacDive
array[object]
06.5.1. origin.tags.level1#
Level 1 Required
string
06.5.2. origin.tags.level2#
Level 2
string, null
06.5.3. origin.tags.level3#
Level 3
string, null
06.6. origin.sampler#
Sampler
Description:
Person that sampled the material
object, null
06.6.1. origin.sampler.name#
Name Required
Description:
Name of the person, preferable: [Last], [First]
string
06.6.2. origin.sampler.identifier#
Identifier
Description:
Person identifiers like ORCID
array[object]
06.6.2.1. origin.sampler.identifier.name#
Name Required
Description:
Name of the identifier
string
06.6.2.2. origin.sampler.identifier.value#
Value Required
Description:
Value of the identifier (can also be a URL)
string
06.6.2.3. origin.sampler.identifier.propertyID#
Property ID
Description:
See schema.org/propertyID
string, null
06.6.2.4. origin.sampler.identifier.url#
URL
Description:
Uniform Resource Locator of a resource on the Internet
string, null
06.6.2.5. origin.sampler.identifier.logo#
Logo
Description:
Logo of the Identifier Organization (e.g. DOI, ORCID, ROR, ...)
string, null
06.7. origin.isolationDate#
Date
Description:
Date of isolation from the sample material, using date range format of dublin core:'YYYY-MM-DD/YYYY-MM-DD' ether side can be empty defining an open ended range, only the year is mandatory, e.g. '/1978' means before 1978
string, null
06.8. origin.isolatedAt#
Isolated At
Description:
Institute where the strain was isolated from the sample
object, null
06.8.1. origin.isolatedAt.name#
Name Required
Description:
Short name of the organization
string
06.8.2. origin.isolatedAt.identifier#
Identifier
Description:
Identifiers of the organization, e.g. ROR
array[object]
06.8.2.1. origin.isolatedAt.identifier.name#
Name Required
Description:
Name of the identifier
string
06.8.2.2. origin.isolatedAt.identifier.value#
Value Required
Description:
Value of the identifier (can also be a URL)
string
06.8.2.3. origin.isolatedAt.identifier.propertyID#
Property ID
Description:
See schema.org/propertyID
string, null
06.8.2.4. origin.isolatedAt.identifier.url#
URL
Description:
Uniform Resource Locator of a resource on the Internet
string, null
06.8.2.5. origin.isolatedAt.identifier.logo#
Logo
Description:
Logo of the Identifier Organization (e.g. DOI, ORCID, ROR, ...)
string, null
06.8.3. origin.isolatedAt.legalName#
Legal Name
Description:
Full legal name of the organization
string, null
06.8.4. origin.isolatedAt.address#
Address
Description:
Address of the organization
object, null
06.8.4.1. origin.isolatedAt.address.addressCountry#
Country
Description:
Country code, see ISO 3166-1 alpha-2
string, null
06.8.4.2. origin.isolatedAt.address.addressRegion#
Region
Description:
Region within the country
string, null
06.8.4.3. origin.isolatedAt.address.addressLocality#
Locality
Description:
Locality within the region
string, null
06.8.4.4. origin.isolatedAt.address.postOfficeBoxNumber#
Post Office Box Number
string, null
06.8.4.5. origin.isolatedAt.address.postalCode#
Postal Code
string, null
06.8.4.6. origin.isolatedAt.address.streetAddress#
Street Address
Description:
Name of the street and number within street
string, null
06.8.5. origin.isolatedAt.url#
URL
Description:
Link to homepage
string, null
06.8.6. origin.isolatedAt.email#
Description:
Contact email
string, null
06.8.7. origin.isolatedAt.logo#
Logo
Description:
Link to logo
string, null
06.9. origin.isolator#
Isolator
Description:
Person that isolated the strain from the sample
object, null
06.9.1. origin.isolator.name#
Name Required
Description:
Name of the person, preferable: [Last], [First]
string
06.9.2. origin.isolator.identifier#
Identifier
Description:
Person identifiers like ORCID
array[object]
06.9.2.1. origin.isolator.identifier.name#
Name Required
Description:
Name of the identifier
string
06.9.2.2. origin.isolator.identifier.value#
Value Required
Description:
Value of the identifier (can also be a URL)
string
06.9.2.3. origin.isolator.identifier.propertyID#
Property ID
Description:
See schema.org/propertyID
string, null
06.9.2.4. origin.isolator.identifier.url#
URL
Description:
Uniform Resource Locator of a resource on the Internet
string, null
06.9.2.5. origin.isolator.identifier.logo#
Logo
Description:
Logo of the Identifier Organization (e.g. DOI, ORCID, ROR, ...)
string, null
06.10. origin.source#
Source Required
Description:
List of JSON paths to source object
array[string]